Class AlignmentReference

Private Readonly alignmentRefGaps

Private Readonly alignmentRefMap

Private Readonly memberRefList

Private Readonly refId

Private addBeg

• addBeg(indexList): void

• Parameters

  • indexList: number[]

  Returns void

Private addEnd

• addEnd(indexList): void

• Parameters

  • indexList: number[]

  Returns void

Private addGap

• addGap(gapBeg, gapLength): void

• Parameters

  • gapBeg: number

  • gapLength: number

  Returns void

Private addRef

• addRef(id, alignment, target): void

• Parameters

  • id: string

  • alignment: AlignmentRefType

  • target: AlignmentRefType

  Returns void

Private extendGap

• extendGap(gapBeg, gapLength): void

• Parameters

  • gapBeg: number

  • gapLength: number

  Returns void