Class SequenceTrackFactory

Hierarchy

SequenceTrackFactory

Implements

TrackFactoryInterface<[AlignmentRequestContextType, string]>

Index

Constructors

Properties

entityInstanceTranslator trackTitleFactory

Methods

addAuthorResIds buildSequenceData getTrack

Constructors

constructor

new SequenceTrackFactory(entityInstanceTranslator?, trackTitleFactory?): SequenceTrackFactory
Parameters
- Optional entityInstanceTranslator: PolymerEntityInstanceTranslate
- Optional trackTitleFactory: TrackTitleFactoryInterface<[AlignmentRequestContextType]>
Returns SequenceTrackFactory
- Defined in src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/SequenceTrackFactory.ts:30

Properties

`Private` `Readonly` entityInstanceTranslator

entityInstanceTranslator: undefined | PolymerEntityInstanceTranslate = undefined

`Private` `Readonly` trackTitleFactory

trackTitleFactory: TrackTitleFactoryInterface<[AlignmentRequestContextType]>

Methods

addAuthorResIds

addAuthorResIds(e, alignmentContext): RcsbFvTrackDataElementInterface
Parameters
- e: RcsbFvTrackDataAnnotationInterface
- alignmentContext: AlignmentContextInterface
Returns RcsbFvTrackDataElementInterface
- Defined in src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/SequenceTrackFactory.ts:88

buildSequenceData

buildSequenceData(config, source): RcsbFvTrackDataElementInterface[]
Parameters
- config: BuildSequenceDataInterface
- source: "from" | "to"
Returns RcsbFvTrackDataElementInterface[]
- Defined in src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/SequenceTrackFactory.ts:60

getTrack

getTrack(alignmentQueryContext, querySequence): Promise<RcsbFvRowConfigInterface>
Parameters
- alignmentQueryContext: AlignmentRequestContextType
- querySequence: string
Returns Promise<RcsbFvRowConfigInterface>
Implementation of TrackFactoryInterface.getTrack
- Defined in src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/SequenceTrackFactory.ts:35

src

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