Class RcsbFvPairwiseAlignment

Protected alignmentCollector

Protected alignmentTracks

Protected annotationCollector

Protected annotationTracks

Protected boardConfigData

Protected buildConfig

Protected Readonly elementId

Protected polymerEntityInstance

Protected Readonly rcsbFv

Protected referenceTrack

Protected rowConfigData

Protected buildAlignmentTracks

• buildAlignmentTracks(alignmentRequestContext, alignmentResponse, trackFactories?): Promise<void>

• Parameters

  • alignmentRequestContext: AlignmentRequestContextType

  • alignmentResponse: AlignmentResponse

  • Optional trackFactories: {
        alignmentTrackFactory?: TrackFactoryInterface<[AlignmentRequestContextType, TargetAlignment]>;
        sequenceTrackFactory?: TrackFactoryInterface<[AlignmentRequestContextType, string]>;
    }

    • Optional alignmentTrackFactory?: TrackFactoryInterface<[AlignmentRequestContextType, TargetAlignment]>

    • Optional sequenceTrackFactory?: TrackFactoryInterface<[AlignmentRequestContextType, string]>

  Returns Promise<void>

Protected buildAnnotationsTrack

• buildAnnotationsTrack(annotationsRequestContext, annotationsFeatures, annotationConfigMap?): Promise<void>

• Parameters

  • annotationsRequestContext: Partial<AnnotationsCollectConfig & CollectGroupAnnotationsInterface>

  • annotationsFeatures: AnnotationFeatures[]

  • Optional annotationConfigMap: AnnotationConfigInterface

  Returns Promise<void>

Protected getBoardConfig

• getBoardConfig(): Promise<RcsbFvBoardConfigInterface>

• Returns Promise<RcsbFvBoardConfigInterface>

Protected getRowsConfig

• getRowsConfig(): Promise<RcsbFvRowConfigInterface[]>

• Returns Promise<RcsbFvRowConfigInterface[]>