Class AlignmentCollector

Implements

AlignmentCollectorInterface

Index

Constructors

Properties

Methods

collect getAlignment getAlignmentLength getTargets requestAlignment

Constructors

constructor

new AlignmentCollector(): AlignmentCollector
Returns AlignmentCollector

Properties

`Readonly`rcsbFvQuery

rcsbFvQuery: RcsbClientClass = rcsbClient

Methods

collect

collect(
requestConfig: AlignmentCollectConfig,
filter?: string[],
): Promise<SequenceAlignments>
Parameters
- requestConfig: AlignmentCollectConfig
- Optionalfilter: string[]
Returns Promise<SequenceAlignments>
Implementation of AlignmentCollectorInterface.collect
- Defined in src/RcsbCollectTools/AlignmentCollector/AlignmentCollector.ts:22

getAlignment

getAlignment(): Promise<SequenceAlignments>
Returns Promise<SequenceAlignments>
Implementation of AlignmentCollectorInterface.getAlignment
- Defined in src/RcsbCollectTools/AlignmentCollector/AlignmentCollector.ts:50

getAlignmentLength

getAlignmentLength(): Promise<number>
Returns Promise<number>
Implementation of AlignmentCollectorInterface.getAlignmentLength
- Defined in src/RcsbCollectTools/AlignmentCollector/AlignmentCollector.ts:60

getTargets

getTargets(): Promise<string[]>
Returns Promise<string[]>
Implementation of AlignmentCollectorInterface.getTargets
- Defined in src/RcsbCollectTools/AlignmentCollector/AlignmentCollector.ts:38

requestAlignment

requestAlignment(
requestConfig: AlignmentCollectConfig,
): Promise<SequenceAlignments>
Parameters
- requestConfig: AlignmentCollectConfig
Returns Promise<SequenceAlignments>
- Defined in src/RcsbCollectTools/AlignmentCollector/AlignmentCollector.ts:70

src