Class RcsbFvEntity

Hierarchy (View Summary)

RcsbFvAbstractModule
- RcsbFvEntity

Constructors

constructor

new RcsbFvEntity(elementId: string, rcsbFv: RcsbFv): RcsbFvEntity
Parameters
- elementId: string
- rcsbFv: RcsbFv
Returns RcsbFvEntity
Inherited from RcsbFvAbstractModule.constructor
- Defined in src/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.ts:62

Properties

`Protected`alignmentCollector

alignmentCollector: AlignmentCollectorInterface = ...

`Protected`alignmentTracks

alignmentTracks: RcsbFvRowConfigInterface[] = []

`Protected`annotationCollector

annotationCollector: AnnotationCollectorInterface = ...

`Protected`annotationTracks

annotationTracks: RcsbFvRowConfigInterface[] = []

`Protected`boardConfigData

boardConfigData: RcsbFvBoardConfigInterface = ...

`Protected`buildConfig

buildConfig: RcsbFvModuleBuildInterface

`Protected` `Readonly`elementId

elementId: string

`Protected`polymerEntityInstance

polymerEntityInstance: PolymerEntityInstanceTranslate

`Protected` `Readonly`rcsbFv

rcsbFv: RcsbFv

`Protected`referenceTrack

referenceTrack: RcsbFvRowConfigInterface

`Protected`rowConfigData

rowConfigData: RcsbFvRowConfigInterface[] = ...

Methods

activeDisplay

activeDisplay(): boolean
Returns boolean
Inherited from RcsbFvAbstractModule.activeDisplay
- Defined in src/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.ts:91

build

build(buildConfig: RcsbFvModuleBuildInterface): Promise<void>
Parameters
- buildConfig: RcsbFvModuleBuildInterface
Returns Promise<void>
Inherited from RcsbFvAbstractModule.build
- Defined in src/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.ts:116

`Protected`buildAlignmentTracks

buildAlignmentTracks(
    alignmentRequestContext: AlignmentRequestContextType,
    alignmentResponse: SequenceAlignments,
    trackFactories?: {
        alignmentTrackFactory?: TrackFactoryInterface<
            [AlignmentRequestContextType, TargetAlignments],
        >;
        sequenceTrackFactory?: TrackFactoryInterface<
            [AlignmentRequestContextType, string],
        >;
    },
): Promise<void>
Parameters
- alignmentRequestContext: AlignmentRequestContextType
- alignmentResponse: SequenceAlignments
- OptionaltrackFactories: {
      alignmentTrackFactory?: TrackFactoryInterface<
          [AlignmentRequestContextType, TargetAlignments],
      >;
      sequenceTrackFactory?: TrackFactoryInterface<
          [AlignmentRequestContextType, string],
      >;
  }
Returns Promise<void>
Inherited from RcsbFvAbstractModule.buildAlignmentTracks
- Defined in src/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.ts:133

`Protected`buildAnnotationsTrack

buildAnnotationsTrack(
    annotationsRequestContext: AnnotationRequestContext,
    annotationsFeatures: SequenceAnnotations[],
    annotationConfigMap?: AnnotationConfigInterface,
): Promise<void>
Parameters
- annotationsRequestContext: AnnotationRequestContext
- annotationsFeatures: SequenceAnnotations[]
- OptionalannotationConfigMap: AnnotationConfigInterface
Returns Promise<void>
Inherited from RcsbFvAbstractModule.buildAnnotationsTrack
- Defined in src/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.ts:151

`Protected`concatAlignmentAndAnnotationTracks

concatAlignmentAndAnnotationTracks(): void
Returns void
Overrides RcsbFvAbstractModule.concatAlignmentAndAnnotationTracks
- Defined in src/RcsbFvWeb/RcsbFvModule/RcsbFvEntity.ts:65

display

display(): Promise<void>
Returns Promise<void>
Inherited from RcsbFvAbstractModule.display
- Defined in src/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.ts:76

getAlignmentResponse

getAlignmentResponse(): Promise<SequenceAlignments>
Returns Promise<SequenceAlignments>
Inherited from RcsbFvAbstractModule.getAlignmentResponse
- Defined in src/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.ts:103

getAnnotationConfigData

getAnnotationConfigData(): Promise<RcsbFvRowConfigInterface[]>
Returns Promise<RcsbFvRowConfigInterface[]>
Inherited from RcsbFvAbstractModule.getAnnotationConfigData
- Defined in src/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.ts:112

`Protected`getBoardConfig

getBoardConfig(): Promise<RcsbFvBoardConfigInterface>
Returns Promise<RcsbFvBoardConfigInterface>
Overrides RcsbFvAbstractModule.getBoardConfig
- Defined in src/RcsbFvWeb/RcsbFvModule/RcsbFvEntity.ts:58

getFeatures

getFeatures(): Promise<Features[]>
Returns Promise<Features[]>
Inherited from RcsbFvAbstractModule.getFeatures
- Defined in src/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.ts:107

getFv

getFv(): RcsbFv
Returns RcsbFv
Inherited from RcsbFvAbstractModule.getFv
- Defined in src/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.ts:95

getPolymerEntityInstanceTranslator

getPolymerEntityInstanceTranslator(): PolymerEntityInstanceTranslate
Returns PolymerEntityInstanceTranslate
Inherited from RcsbFvAbstractModule.getPolymerEntityInstanceTranslator
- Defined in src/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.ts:72

`Protected`getRowsConfig

getRowsConfig(): Promise<RcsbFvRowConfigInterface[]>
Returns Promise<RcsbFvRowConfigInterface[]>
Inherited from RcsbFvAbstractModule.getRowsConfig
- Defined in src/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.ts:169

getTargets

getTargets(): Promise<string[]>
Returns Promise<string[]>
Inherited from RcsbFvAbstractModule.getTargets
- Defined in src/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.ts:99

`Protected`protectedBuild

protectedBuild(): Promise<void>
Returns Promise<void>
Overrides RcsbFvAbstractModule.protectedBuild
- Defined in src/RcsbFvWeb/RcsbFvModule/RcsbFvEntity.ts:23

setPolymerEntityInstanceTranslator

setPolymerEntityInstanceTranslator(
polymerEntityInstance: PolymerEntityInstanceTranslate,
): void
Parameters
- polymerEntityInstance: PolymerEntityInstanceTranslate
Returns void
Inherited from RcsbFvAbstractModule.setPolymerEntityInstanceTranslator
- Defined in src/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.ts:68

wait

wait(): Promise<void>
Returns Promise<void>
Inherited from RcsbFvAbstractModule.wait
- Defined in src/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.ts:126

Class RcsbFvEntity

Hierarchy (View Summary)

Index

Constructors

Properties

Methods

Constructors

constructor

Parameters

Returns RcsbFvEntity

Properties

ProtectedalignmentCollector

ProtectedalignmentTracks

ProtectedannotationCollector

ProtectedannotationTracks

ProtectedboardConfigData

ProtectedbuildConfig

Protected ReadonlyelementId

ProtectedpolymerEntityInstance

Protected ReadonlyrcsbFv

ProtectedreferenceTrack

ProtectedrowConfigData

Methods

activeDisplay

Returns boolean

build

Parameters

Returns Promise<void>

ProtectedbuildAlignmentTracks

Parameters

Returns Promise<void>

ProtectedbuildAnnotationsTrack

Parameters

Returns Promise<void>

ProtectedconcatAlignmentAndAnnotationTracks

Returns void

display

Returns Promise<void>

getAlignmentResponse

Returns Promise<SequenceAlignments>

getAnnotationConfigData

Returns Promise<RcsbFvRowConfigInterface[]>

ProtectedgetBoardConfig

Returns Promise<RcsbFvBoardConfigInterface>

getFeatures

Returns Promise<Features[]>

getFv

Returns RcsbFv

getPolymerEntityInstanceTranslator

Returns PolymerEntityInstanceTranslate

ProtectedgetRowsConfig

Returns Promise<RcsbFvRowConfigInterface[]>

getTargets

Returns Promise<string[]>

ProtectedprotectedBuild

Returns Promise<void>

setPolymerEntityInstanceTranslator

Parameters

Returns void

wait

Returns Promise<void>

Settings

On This Page

`Protected`alignmentCollector

`Protected`alignmentTracks

`Protected`annotationCollector

`Protected`annotationTracks

`Protected`boardConfigData

`Protected`buildConfig

`Protected` `Readonly`elementId

`Protected`polymerEntityInstance

`Protected` `Readonly`rcsbFv

`Protected`referenceTrack

`Protected`rowConfigData

`Protected`buildAlignmentTracks

`Protected`buildAnnotationsTrack

`Protected`concatAlignmentAndAnnotationTracks

`Protected`getBoardConfig

`Protected`getRowsConfig

`Protected`protectedBuild