Class PlainObservedAlignmentTrackFactory

Hierarchy

PlainObservedAlignmentTrackFactory

Implements

TrackFactoryInterface<[AlignmentRequestContextType, TargetAlignment]>

Index

Constructors

Properties

alignmentTrackFactory entityInstanceNumberMap instanceEntityMap unObservedResidues

Methods

alignedRegionToTrackElementList collectFeatureEntryProperties getTrack prepareFeatures prepareFeaturesAlignmentMap

Constructors

constructor

new PlainObservedAlignmentTrackFactory(entityInstanceTranslator?): PlainObservedAlignmentTrackFactory
Parameters
- Optional entityInstanceTranslator: PolymerEntityInstanceTranslate
Returns PlainObservedAlignmentTrackFactory
- Defined in src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainObservedAlignmentTrackFactory.ts:34

Properties

`Private` alignmentTrackFactory

alignmentTrackFactory: PlainAlignmentTrackFactory

`Private` `Readonly` entityInstanceNumberMap

entityInstanceNumberMap: Map<string, number> = ...

`Private` `Readonly` instanceEntityMap

instanceEntityMap: Map<string, string> = ...

`Private` unObservedResidues

unObservedResidues: Map<string, number[]> = ...

Methods

`Private` alignedRegionToTrackElementList

alignedRegionToTrackElementList(region, alignmentContext): RcsbFvTrackDataElementInterface[]
Parameters
- region: AlignedRegion
- alignmentContext: AlignmentContextInterface
Returns RcsbFvTrackDataElementInterface[]
- Defined in src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainObservedAlignmentTrackFactory.ts:104

`Private` collectFeatureEntryProperties

collectFeatureEntryProperties(unObservedRegions): Promise<void>
Parameters
- unObservedRegions: AnnotationFeatures[]
Returns Promise<void>
- Defined in src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainObservedAlignmentTrackFactory.ts:47

getTrack

getTrack(alignmentRequestContext, targetAlignment): Promise<RcsbFvRowConfigInterface>
Parameters
- alignmentRequestContext: AlignmentRequestContextType
- targetAlignment: TargetAlignment
Returns Promise<RcsbFvRowConfigInterface>
Implementation of TrackFactoryInterface.getTrack
- Defined in src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainObservedAlignmentTrackFactory.ts:38

prepareFeatures

prepareFeatures(unObservedRegions): Promise<void>
Parameters
- unObservedRegions: AnnotationFeatures[]
Returns Promise<void>
- Defined in src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainObservedAlignmentTrackFactory.ts:42

`Private` prepareFeaturesAlignmentMap

prepareFeaturesAlignmentMap(unObservedRegions): void
Parameters
- unObservedRegions: AnnotationFeatures[]
Returns void
- Defined in src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainObservedAlignmentTrackFactory.ts:64

src

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