Class MsaAlignmentTrackFactory

Hierarchy

MsaAlignmentTrackFactory

Implements

TrackFactoryInterface<[AlignmentRequestContextType, TargetAlignment]>

Index

Constructors

Properties

observedAlignmentTrackFactory positionalScoreAlignmentTrackFactory

Methods

getTrack prepareFeatures

Constructors

constructor

new MsaAlignmentTrackFactory(entityInstanceTranslator?): MsaAlignmentTrackFactory
Parameters
- Optional entityInstanceTranslator: PolymerEntityInstanceTranslate
Returns MsaAlignmentTrackFactory
- Defined in src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/MsaAlignmentTrackFactory.ts:16

Properties

`Private` observedAlignmentTrackFactory

observedAlignmentTrackFactory: PlainObservedAlignmentTrackFactory

`Private` positionalScoreAlignmentTrackFactory

positionalScoreAlignmentTrackFactory: PositionalScoreAlignmentTrackFactory

Methods

getTrack

getTrack(alignmentQueryContext, targetAlignment): Promise<RcsbFvRowConfigInterface>
Parameters
- alignmentQueryContext: AlignmentRequestContextType
- targetAlignment: TargetAlignment
Returns Promise<RcsbFvRowConfigInterface>
Implementation of TrackFactoryInterface.getTrack
- Defined in src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/MsaAlignmentTrackFactory.ts:21

prepareFeatures

prepareFeatures(unObservedRegions, positionalScores): Promise<void>
Parameters
- unObservedRegions: AnnotationFeatures[]
- positionalScores: AnnotationFeatures[]
Returns Promise<void>
- Defined in src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/MsaAlignmentTrackFactory.ts:28

src

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