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@rcsb/rcsb-saguaro-app
@rcsb/rcsb-saguaro-app
RcsbFvWeb/RcsbFvBuilder/RcsbFvPairwiseAligmentBuilder
RcsbFvPairwiseAligmentBuilder
Class RcsbFvPairwiseAligmentBuilder
Hierarchy
RcsbFvPairwiseAligmentBuilder
Index
Constructors
constructor
Methods
build
Pairwise
Alignment
Constructors
constructor
new
Rcsb
Fv
Pairwise
Aligment
Builder
(
)
:
RcsbFvPairwiseAligmentBuilder
Returns
RcsbFvPairwiseAligmentBuilder
Methods
Static
build
Pairwise
Alignment
build
Pairwise
Alignment
(
elementId
,
psa
,
additionalConfig
?
)
:
Promise
<
RcsbFvModulePublicInterface
<
{}
,
{}
,
{}
,
{}
>
>
Parameters
elementId
:
string
psa
:
PairwiseAlignmentInterface
Optional
additionalConfig
:
RcsbFvAdditionalConfig
Returns
Promise
<
RcsbFvModulePublicInterface
<
{}
,
{}
,
{}
,
{}
>
>
Settings
Member Visibility
Protected
Private
Inherited
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On This Page
constructor
build
Pairwise
Alignment
src
ExternalResources
NcbiData
NcbiGenomeSequenceData.ts
NcbiGenomeSequenceData
NcbiSummary.ts
NcbiSummary
ChromosomeMetadataInterface
TaxonomyMetadataInterface
RcsbAnnotationConfig
AnnotationConfigInterface.ts
AnnotationConfigInterface
RcsbAnnotationConfigInterface
RcsbDistributionConfigInterface
RcsbTrackBlockConfigInterface
RcsbTrackConfigInterface
RcsbAnnotationConfig.ts
RcsbAnnotationConfig
RcsbMergedTypesInterface
RcsbAnnotationConstants.ts
RcsbAnnotationConstants
RcsbDistributionConfig.ts
RcsbDistributionConfig
RcsbChartWeb
AbsractChartComponent.tsx
<internal>
AbstractChartComponent
BarChartComponent.tsx
BarChartComponent
HistogramChartComponent.tsx
<internal>
HistogramChartComponent
RcsbCollectTools
AlignmentCollector
AlignmentCollector.ts
AlignmentCollector
AlignmentCollectorInterface.ts
<internal>
AlignmentCollectorInterface
CollectAlignmentInterface
CollectGroupAlignmentInterface
AlignmentCollectConfig
AnnotationCollector
AnnotationCollector.ts
AnnotationCollector
AnnotationCollectorInterface.ts
AnnotationCollectorInterface
AnnotationProcessingInterface
AnnotationsCollectConfig
CollectGroupAnnotationsInterface
CommonAnnotationInterface
AnnotationRequestContext
IncreaseAnnotationValueType
DataCollectors
AssemblyInterfacesCollector.ts
AssemblyInterfacesCollector
AssemblyInterfacesInterface
DataCollectorInterface.ts
MultipleDocumentPropertyCollectorInterface
SingleDocumentPropertyCollectorInterface
DataCollectorArgsType
EntryAssembliesCollector.ts
EntryAssembliesCollector
GroupMemberCollector.ts
GroupMemberCollector
GroupPropertyCollector.ts
GroupPropertyCollector
GroupPropertyInterface
InterfaceInstanceCollector.ts
InterfaceInstanceCollector
InterfaceInstanceInterface
MultipleEntityInstancesCollector.ts
MultipleEntityInstancesCollector
MultipleEntryPropertyCollector.ts
MultipleEntryPropertyCollector
EntryPropertyIntreface
MultipleInstanceSequencesCollector.ts
MultipleInstanceSequencesCollector
InstanceSequenceInterface
MultiplePolymerEntityCollector.ts
MultiplePolymerEntityCollector
PolymerEntityInterface
PolymerEntityChromosomeCollector.ts
PolymerEntityChromosomeCollector
PolymerEntityInstancesCollector.ts
PolymerEntityInstancesCollector
PolymerEntityInstanceInterface
FeatureTools
ExternalTrackBuilderInterface.ts
ExternalTrackBuilderInterface
FeatureTools.ts
FeatureTools
RcsbExport
FeatureType.ts
<internal>
FeatureType
RcsbFvUI.ts
RcsbFvUI
RcsbFvExamples
ChromosomeFv.ts
EntitySummaryFv.ts
ExternalDataProvider.ts
GroupHistogram.ts
InstanceFv.ts
InstanceSequenceFv.ts
ResidueDistribution.ts
SequenceIdentityGroupAlignmentFv.tsx
SequenceIdentityGroupFv.ts
SingleEntitySummaryFv.ts
TestCollectors.ts
UniprotAlignmentFv.ts
UniprotEntityInstanceFv.ts
UniprotFv.ts
UniprotGroupFv.ts
RcsbFvUI
Components
FilterItemComponent.tsx
<internal>
FilterItemComponent
ItemComponent.tsx
ItemComponent
PaginationItemComponent.tsx
PaginationItemComponent
PaginationItemProps
PaginationItemState
Helper
ActionMethods.ts
<internal>
ActionMethods
AbstractMenuItemComponent.tsx
AbstractMenuItemComponent
MenuItemComponentType
GroupPfvUI.tsx
GroupPfvUI
UiComponentType
RcsbFvWeb
RcsbFvBuilder
RcsbFvAssemblyBuilder.ts
RcsbFvAssemblyBuilder
RcsbFvChromosomeBuilder.ts
RcsbFvChromosomeBuilder
RcsbFvContextManager.ts
<internal>
rcsbFvCtxManager
RcsbFvCoreBuilder.ts
RcsbFvCoreBuilder
CreateFvInterface
RcsbFvDataProviderBuilder.ts
RcsbFvDataProviderBuilder
RcsbFvEntityBuilder.ts
RcsbFvEntityBuilder
RcsbFvGroupAlignmentBuilder.ts
RcsbFvGroupAlignmentBuilder
RcsbFvGroupBuilder.ts
RcsbFvGroupBuilder
RcsbFvInstanceBuilder.ts
<internal>
RcsbFvInstanceBuilder
InstanceSequenceConfig
InstanceSequenceOnchangeInterface
RcsbFvPairwiseAligmentBuilder.ts
RcsbFvPairwiseAligmentBuilder
RcsbFvProteinSequenceBuilder.ts
RcsbFvProteinSequenceBuilder
PfvBuilderInterface
RcsbFvUniprotBuilder.ts
RcsbFvUniprotBuilder
UniprotSequenceConfig
UniprotSequenceOnchangeInterface
RcsbFvComponents
ComponentsManager.tsx
ComponentsManager
SelectButtonConfigInterface
LoaderSpinner.tsx
LoaderSpinner
MountableComponent.ts
MountableComponent
RcsbTabs.tsx
RcsbTabs
RcsbTabsInterface
SelectButton.tsx
<internal>
SelectButton
GroupOptionPropsInterface
GroupedOptionsInterface
OptionPropsInterface
SelectOptionInterface
SelectOptionProps
SelectButtonManager.tsx
SelectButtonManager
SelectButtonTitle.tsx
SelectButtonTitle
RcsbFvFactories
RcsbFvBlockFactory
BlockManager
AnnotationBlockManager.ts
AnnotationBlockManager
AnnotationTrackManager.ts
AnnotationTrackManagerFactory
FeaturePositionGaps
BlockManagerInterface.ts
BlockManagerInterface
TrackManagerInterface.ts
TrackManagerFactoryInterface
TrackManagerInterface
AlignmentBlockFactory.ts
AlignmentBlockFactory
AnnotationsBlockFactory.ts
AnnotationsBlockFactory
BlockFactoryInterface.ts
BlockFactoryInterface
RcsbFvTrackFactory
TrackFactoryImpl
Helper
TrackUtils.ts
TrackUtils
AlignmentTrackFactory.ts
AlignmentTrackFactory
AlignmentRequestContextType
AnnotationsTrackFactory.ts
AnnotationsTrackFactory
MsaAlignmentTrackFactory.ts
MsaAlignmentTrackFactory
PlainAlignmentTrackFactory.ts
PlainAlignmentTrackFactory
AlignmentRequestContextType
PlainObservedAlignmentTrackFactory.ts
PlainObservedAlignmentTrackFactory
PositionalScoreAlignmentTrackFactory.ts
PositionalScoreAlignmentTrackFactory
SequenceTrackFactory.ts
<internal>
SequenceTrackFactory
TrackTitleFactoryImpl
AlignmentTrackTitleFactory.ts
AlignmentTrackTitleFactory
AnnotationsTrackTitleFactory.ts
AnnotationsTrackTitleFactory
ExperimentalAlignmentTrackTitleFactory.ts
ExperimentalAlignmentTrackTitleFactory
InstanceSequenceTrackTitleFactory.ts
InstanceSequenceTrackTitleFactory
ModelAlignmentTrackTitleFactory.ts
ModelAlignmentTrackTitleFactory
SequenceTrackTitleFactory.ts
SequenceTrackTitleFactory
RcsbFvTrackDataAnnotationInterface.ts
RcsbFvTrackDataAnnotationInterface
TrackFactoryInterface.ts
TrackFactoryInterface
TrackTitleFactoryInterface.ts
TrackTitleFactoryInterface
RcsbFvGroup
GroupTabs
GroupPfvApp.ts
GroupPfvApp
getReferenceFromGroupProvenance
GroupPfvTabs.tsx
<internal>
GroupPfvTabs
RcsbFvGroupTabsBuilder.tsx
RcsbFvGroupTabsBuilder
RcsbFvModule
RcsbFvAbstractModule.ts
RcsbFvAbstractModule
RcsbFvChromosome.ts
RcsbFvChromosome
RcsbFvDataProvider.ts
RcsbFvDataProvider
RcsbFvEntity.ts
RcsbFvEntity
RcsbFvGroupAlignment.ts
RcsbFvGroupAlignment
RcsbFvGroupAnnotation.ts
RcsbFvGroupAnnotation
RcsbFvInstance.ts
RcsbFvInstance
RcsbFvInterface.ts
RcsbFvInterface
filter
interfaceAnnotations
RcsbFvModuleInterface.ts
RcsbFvAdditionalConfig
RcsbFvModuleBuildInterface
RcsbFvModuleInterface
RcsbFvModulePublicInterface
RcsbModuleDataProviderInterface
RcsbContextType
RcsbFvPairwiseAlignment.ts
RcsbFvPairwiseAlignment
RcsbFvProteinSequence.ts
RcsbFvProteinSequence
RcsbFvUniprot.ts
RcsbFvUniprot
RcsbFvUniprotAlignment.ts
RcsbFvUniprotAlignment
RcsbFvUniprotEntity.ts
RcsbFvUniprotEntity
RcsbFvUniprotInstance.ts
RcsbFvUniprotInstance
RcsbFvTooltip
RcsbFvTooltip.ts
RcsbFvTooltip
RcsbFvWorkers
RcsbFvAlignmentCollectorQueue.ts
<internal>
RcsbFvAlignmentCollectorQueue
RcsbFvAlignmentCollectorWorker.worker.ts
RcsbFvBuilder.ts
buildAssemblySequenceFv
buildChromosome
buildDataProviderFv
buildEntityChromosome
buildEntityFv
buildEntitySummaryFv
buildEntryChromosome
buildFullChromosome
buildGroupFv
buildInstanceFv
buildInstanceSequenceFv
buildMultipleAlignmentSequenceFv
buildMultipleInstanceSequenceFv
buildPairwiseAlignment
buildPfv
buildSequenceIdentityAlignmentFv
buildSingleEntitySummaryFv
buildUniprotAlignmentFv
buildUniprotEntityFv
buildUniprotEntityInstanceFv
buildUniprotFv
unmount
RcsbGraphQL
RcsbClient.ts
<internal>
RcsbClient
rcsbClient
RcsbCoreQueryInterface.ts
RcsbCoreQueryInterface
RcsbQueryAlignment.ts
RcsbQueryAlignment
RcsbQueryGroupAlignment
RcsbQueryGroupAlignmentArguments
RcsbQueryAnnotations.ts
RcsbQueryAnnotations
RcsbQueryGroupAnnotations
RcsbQueryAssemblyInterfaces.ts
RcsbQueryAssemblyInterfaces
RcsbQueryEntryInstances.ts
RcsbQueryEntryInstances
RcsbQueryGroup.ts
RcsbQueryGroup
RcsbQueryInterfaceInstances.ts
RcsbQueryInterfaceInstances
RcsbQueryMultipleEntityInstances.ts
RcsbQueryMultipleEntityInstances
RcsbQueryMultipleEntriesProperties.ts
RcsbQueryMultipleEntriesProperties
RcsbQueryMultipleInstanceSequences.ts
RcsbQueryMultipleInstanceSequences
RcsbGroupWeb
RcsbGroupView
RcsbGroupChart
GroupChartAdditionalProperties.ts
GroupChartAdditionalProperties
LayoutConfigInterface
GroupChartEvents.ts
GroupChartEvents
GroupChartLayout.tsx
GroupChartLayout
RcsbChartLayoutInterface
ChartMapType
GroupChartTools.ts
GroupChartMap
RcsbGroupChartComponent.tsx
<internal>
RcsbGroupChartComponent
RcsbStatsChartComponent.tsx
<internal>
RcsbStatsChartComponent
RcsbGroupContent
RcsbGroupContentComponent.tsx
<internal>
RcsbGroupContentComponent
RcsbGroupContentTextInterface
RcsbGroupMembers
Components
Slider.tsx
Slider
SliderInterface
SlideAction
actionIcon
GroupMemberItem.tsx
<internal>
GroupMemberItem
ItemFeaturesInterface
GroupMembersGrid.tsx
<internal>
GroupMembersGrid
RcsbGroupMembersComponent.tsx
<internal>
RcsbGroupMembersComponent
searchRequest
RcsbGroupSeacrhQuery
RcsbGroupSeacrhQueryComponent.tsx
SearchQueryComponentFactory
SearchQueryContextManager.ts
<internal>
SearchQueryContextManager
SearchQueryContextManagerSubjectInterface
RcsbResidueChart
ResidueChartFactories
DistributionChartFactoryImpl
DistributionChartFactory.ts
DistributionChartFactory
ResidueDistributionFactoryImpl
MultipleTrackDistributionFactory.ts
MultipleTrackDistributionFactory
NumericalTrackDistributionFactory.ts
NumericalTrackDistributionFactory
TrackDistributionFactory.ts
TrackDistributionFactory
TrackBlockFactoryImpl
TrackBlockFactory.ts
TrackBlockFactory
ResidueDistributionFactoryInterface.ts
DistributionChartFactoryInterface
ResidueBucket
ResidueDistributionFactoryInterface
ResidueDistributionInterface
TrackBlockFactoryInterface
ResidueChartTools
Helper.ts
Helper
ResidueChartTools.ts
ResidueChartTools
ResidueChartInterface
RcsbResidueChartComponent.tsx
<internal>
RcsbResidueChartComponent
RcsbGroupDisplay.tsx
RcsbGroupDisplay
RcsbGroupBuilder.ts
searchQueryContextManager
buildGroup
buildGroupContent
buildGroupMembers
buildResidueDistribution
buildSearchRequest
RcsbQueries
QueryCheck.ts
RcsbRequest
RcsbRequestClient.ts
rcsbRequestClient
RcsbRequestContextManager.ts
<internal>
rcsbRequestCtxManager
RcsbRequestTools.ts
RcsbRequestTools
RcsbSeacrh
FacetStore
DepositionGroupFacetStore.ts
<internal>
depositionGroupFacetStore
EntityGranularitySearchFacetStore.ts
<internal>
entityGranularityGroupFacetStore
FacetMemberInterface.ts
FacetMemberInterface
FacetType
FacetStoreInterface.ts
FacetStoreInterface
SequenceGroupFacetStore.ts
<internal>
sequenceGroupFacetStore
SingleFacets.ts
CATH_FACET
CHEM_COMP_FACET
ECOD_FACET
ENTITY_NAME_FACET
ENZYME_CLASS_FACET
EXPERIMENTAL_METHOD_FACET
GO_COMPONENT_FACET
GO_FUNCTION_FACET
GO_PROCESS_FACET
LIGAND_FACET
LIGAND_OF_INTEREST_FACET
METHODOLOGY_FACET
ORGANISM_FACET
PFAM_FACET
RELEASE_DATE_FACET
RESOLUTION_FACET
SCOP_FACET
SearchFacets
TAXONOMY_FACET
UniprotGroupFacetStore.ts
<internal>
uniprotGroupFacetStore
FacetTools.ts
FacetTools
RcsbChartInterface
SearchFilter
SearchQueryTools.ts
SearchQueryTools
SearchRequestProperty.ts
<internal>
searchRequestProperty
RcsbServerConfig
ServerConfig.ts
rcsbFvWebAppPath
RcsbUtils
Groups
GroupGapLessTransformer.ts
GroupGapLessTransformer
GroupPropertiesProvider.ts
<internal>
GroupPropertiesProvider
GroupPropertiesProviderInterface
GroupPropertyType
GroupProvenanceToAggregationType.ts
<internal>
groupProvenanceToReturnType
Helpers
Assertions.ts
Assertions
DataContainer.ts
DataContainer
DataContainerReader
ObservableHelper.ts
ObservableHelper
Operator.ts
Operator
SingletonMap.ts
SingletonMap
UrlTools.ts
UrlTools
PairwiseAlignmentTools
AlignmentReference.ts
<internal>
AlignmentReference
PairwiseAlignmentBuilder.ts
PairwiseAlignmentBuilder
PairwiseAlignmentInterface
TrackGenerators
AlignmentGlobalBindingSite.ts
alignmentGlobalLigandBindingSite
BurialFraction.ts
burialFraction
burialFractionFilter
BuriedResidues.ts
buriedResidues
buriedResiduesFilter
GroupExternalTrackBuilder.ts
groupExternalTrackBuilder
Logo.ts
Logo
Translators
AssemblyInterfacesTranslate.ts
AssemblyInterfacesTranslate
EntryAssemblyTranslate.ts
EntryAssemblyTranslate
InterfaceInstanceTranslate.ts
InterfaceInstanceTranslate
MultipleEntityInstanceTranslate.ts
MultipleEntityInstanceTranslate
PolymerEntityChromosomeTranslate.ts
PolymerEntityChromosomeTranslate
PolymerEntityInstanceTranslate.ts
PolymerEntityInstanceTranslate
AlignmentContextInterface
app.ts
AlignmentTrackFactory
AnnotationsTrackFactory
FeatureType
MsaAlignmentTrackFactory
PlainAlignmentTrackFactory
PlainObservedAlignmentTrackFactory
PositionalScoreAlignmentTrackFactory
RcsbFvUI
RcsbRequestContextManager
SequenceTrackFactory
buildAssemblySequenceFv
buildChromosome
buildDataProviderFv
buildEntityChromosome
buildEntityFv
buildEntitySummaryFv
buildEntryChromosome
buildFullChromosome
buildGroupFv
buildInstanceFv
buildInstanceSequenceFv
buildMultipleAlignmentSequenceFv
buildMultipleInstanceSequenceFv
buildPairwiseAlignment
buildPfv
buildSequenceIdentityAlignmentFv
buildSingleEntitySummaryFv
buildUniprotAlignmentFv
buildUniprotEntityFv
buildUniprotEntityInstanceFv
buildUniprotFv
unmount
constants.ts
SearchFacets
plot.ts
buildGroup
buildGroupContent
buildGroupMembers
buildResidueDistribution
buildSearchRequest
searchQueryContextManager
"*.css"
"*.graphql"
"*.sass"
"*.scss"
"@d3fc/d3fc-sample"
"boxicons/*.svg"
"codegen.*.json"
"ideogram"
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