Interface AlignmentSummary

Hierarchy

  • AlignmentSummary

Properties

aln_coverage? n_aln_residue_pairs? n_modeled_residues? scores? seq_aln_len?

Properties

Optional aln_coverage

aln_coverage?: number[]

Fraction of residues matched by the superposition (related by spacial proximity) relative to the total number of modeled residues being aligned

Optional n_aln_residue_pairs

n_aln_residue_pairs?: number

Number of residue (alpha carbon) pairs matched by the superposition

Optional n_modeled_residues

n_modeled_residues?: number[]

Number of residues with coordinates used for structure alignment

Optional scores

scores?: {
    type?: "RMSD" | "TM-score" | "similarity-score" | "sequence-similarity" | "sequence-identity";
    value?: number;
}[]

Type declaration

  • Optional type?: "RMSD" | "TM-score" | "similarity-score" | "sequence-similarity" | "sequence-identity"

    Similarity score type: RMSD: a simple root mean square deviation between the superposed residues; TM-score: template modeling score - topological similarity of structures; similarity-score: similarity score specific to the method; sequence-identity: the percent of residues in the alignment that are sequence-identical; sequence-similarity: the percent of residues in the alignment that are sequence-similar

  • Optional value?: number

    Similarity score value

Optional seq_aln_len

seq_aln_len?: number

Sequence alignment length (including gaps)

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