Class AlignmentReference

Hierarchy

  • AlignmentReference

Constructors

constructor

Properties

alignmentMap alignmentRefGaps alignmentRefMap memberRefList refId

Methods

addAlignment addBeg addEnd addGap addRef addUniqueAlignmentId buildAlignments extendGap getAlignmentEntry getSequences init

Constructors

constructor

Properties

Private Readonly alignmentMap

alignmentMap: Map<string, {
    alignmentId: string;
    alignmentIndex: number;
    entryId: string;
    instanceId: string;
    pairIndex: number;
    sequence: string;
}> = ...

Type declaration

  • alignmentId: string
  • alignmentIndex: number
  • entryId: string
  • instanceId: string
  • pairIndex: number
  • sequence: string

Private Readonly alignmentRefGaps

alignmentRefGaps: Record<number, number> = {}

Private alignmentRefMap

alignmentRefMap: AlignmentRefType

Private Readonly memberRefList

memberRefList: AlignmentMemberType[] = []

Private refId

refId: string

Methods

addAlignment

Private addBeg

Private addEnd

Private addGap

Private addRef

addUniqueAlignmentId

buildAlignments

Private extendGap

getAlignmentEntry

  • Parameters

    • alignmentId: string

    Returns {
        alignmentId: string;
        alignmentIndex: number;
        entryId: string;
        instanceId: string;
        pairIndex: number;
        sequence: string;
    }

    • alignmentId: string
    • alignmentIndex: number
    • entryId: string
    • instanceId: string
    • pairIndex: number
    • sequence: string

getSequences

init

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