@rcsb/rcsb-saguaro-3d
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    Interface AlignmentSummary

    interface AlignmentSummary {
        aln_coverage?: number[];
        n_aln_residue_pairs?: number;
        n_modeled_residues?: number[];
        scores?: {
            type?:
                | "RMSD"
                | "similarity-score"
                | "sequence-identity"
                | "TM-score"
                | "sequence-similarity";
            value?: number;
        }[];
        seq_aln_len?: number;
    }
    Index

    Properties

    aln_coverage? n_aln_residue_pairs? n_modeled_residues? scores? seq_aln_len?

    Properties

    aln_coverage?: number[]

    Fraction of residues matched by the superposition (related by spacial proximity) relative to the total number of modeled residues being aligned

    n_aln_residue_pairs?: number

    Number of residue (alpha carbon) pairs matched by the superposition

    n_modeled_residues?: number[]

    Number of residues with coordinates used for structure alignment

    scores?: {
        type?:
            | "RMSD"
            | "similarity-score"
            | "sequence-identity"
            | "TM-score"
            | "sequence-similarity";
        value?: number;
    }[]

    Type Declaration

    • Optionaltype?:
          | "RMSD"
          | "similarity-score"
          | "sequence-identity"
          | "TM-score"
          | "sequence-similarity"

      Similarity score type: RMSD: a simple root mean square deviation between the superposed residues; TM-score: template modeling score - topological similarity of structures; similarity-score: similarity score specific to the method; sequence-identity: the percent of residues in the alignment that are sequence-identical; sequence-similarity: the percent of residues in the alignment that are sequence-similar

    • Optionalvalue?: number

      Similarity score value

    seq_aln_len?: number

    Sequence alignment length (including gaps)

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