Class AlignmentReference

new AlignmentReference(): AlignmentReference

addAlignment(
    id: string,
    alignment: AlignmentRefType,
    target: AlignmentRefType,
): void

addUniqueAlignmentId(
    result: Alignment,
    alignmentIndex: number,
    pairIndex?: 0 | 1,
): string

buildAlignments(): SequenceAlignments

getAlignmentEntry(
    alignmentId: string,
): {
    alignmentId: string;
    alignmentIndex: number;
    entryId: string;
    instanceId: string;
    pairIndex: number;
    sequence: string;
}

getSequences(): Promise<InstanceSequenceInterface[]>

init(result: Alignment): Promise<void>