org.rcsb.mmtf.dataholders

Class Group

java.lang.Object

org.rcsb.mmtf.dataholders.Group

All Implemented Interfaces:

Serializable

public class Group
extends Object
implements Serializable

Group (residue) level data store.

Author:

Anthony Bradley

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
Group()

Method Summary

Modifier and Type	Method and Description
boolean	equals(Object obj)
String[]	getAtomNameList() Gets the atom info.
int[]	getBondAtomList() Gets the bond indices.
int[]	getBondOrderList() Gets the bond orders.
String	getChemCompType() Get the chemical component type (in mmCIF as _chem_comp.type).
String[]	getElementList()
int[]	getFormalChargeList() Gets the atom charges.
String	getGroupName() Gets the group name.
char	getSingleLetterCode() Gets the single letter code.
int	hashCode()
void	setAtomNameList(String[] inputAtomInfo) Sets the atom info.
void	setBondAtomList(int[] inputBondIndices) Sets the bond indices.
void	setBondOrderList(int[] inputBondOrders) Sets the bond orders.
void	setChemCompType(String groupType)
void	setElementList(String[] elementList)
void	setFormalChargeList(int[] inputAtomCharges) Sets the atom charges.
void	setGroupName(String resName) Sets the group name.
void	setSingleLetterCode(char inputSingleLetterCode) Sets the single letter code.

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Group

public Group()

Method Detail

hashCode

public int hashCode()

Overrides:

hashCode in class Object

equals

public boolean equals(Object obj)

Overrides:

equals in class Object

getAtomNameList

public String[] getAtomNameList()

Gets the atom info.

Returns:

the atom info

setAtomNameList

public void setAtomNameList(String[] inputAtomInfo)

Sets the atom info.

Parameters:

inputAtomInfo - the new atom info

getBondOrderList

public int[] getBondOrderList()

Gets the bond orders.

Returns:

the bond orders

setBondOrderList

public void setBondOrderList(int[] inputBondOrders)

Sets the bond orders.

Parameters:

inputBondOrders - the new bond orders

getBondAtomList

public int[] getBondAtomList()

Gets the bond indices.

Returns:

the bond indices

setBondAtomList

public void setBondAtomList(int[] inputBondIndices)

Sets the bond indices.

Parameters:

inputBondIndices - the new bond indices

getGroupName

public String getGroupName()

Gets the group name.

Returns:

the group name

setGroupName

public void setGroupName(String resName)

Sets the group name.

Parameters:

resName - the new group name

getFormalChargeList

public int[] getFormalChargeList()

Gets the atom charges.

Returns:

the atom charges

setFormalChargeList

public void setFormalChargeList(int[] inputAtomCharges)

Sets the atom charges.

Parameters:

inputAtomCharges - the new atom charges

getSingleLetterCode

public char getSingleLetterCode()

Gets the single letter code.

Returns:

the single letter code

setSingleLetterCode

public void setSingleLetterCode(char inputSingleLetterCode)

Sets the single letter code.

Parameters:

inputSingleLetterCode - the new single letter code

getChemCompType

public String getChemCompType()

Get the chemical component type (in mmCIF as _chem_comp.type).

Returns:

the groupType - corresponds to _chem_comp.type

setChemCompType

public void setChemCompType(String groupType)

Parameters:

groupType - the groupType (corresponds to _chem_comp.type) to set

getElementList

public String[] getElementList()

Returns:

the list of elements (e.g. C for Carbon and Ca for Calcium)

setElementList

public void setElementList(String[] elementList)

Parameters:

elementList - the list of elements (e.g. C for Carbon and Ca for Calcium)