org.rcsb.mmtf.dataholders

Class BioAssemblyData

java.lang.Object

org.rcsb.mmtf.dataholders.BioAssemblyData

All Implemented Interfaces:

Serializable

public class BioAssemblyData
extends Object
implements Serializable

Data store for the biological assembly annotation as provided by the PDB. Contains all the information required to build the Biological Assembly from the asymmetric unit. Note that the PDB allows for 1 or more Biological Assemblies for a given entry. They are identified by the id field.

Author:

Anthony Bradley

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
BioAssemblyData() Constructor without setting the name.
BioAssemblyData(String name) Constructor setting the name and initialising an empty transform list.

Method Summary

Modifier and Type	Method and Description
String	getName()
List<BioAssemblyTransformation>	getTransformList() Gets the list of transforms.
void	setName(String name)
void	setTransformList(List<BioAssemblyTransformation> inputTransforms) Sets the transforms.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BioAssemblyData

public BioAssemblyData(String name)

Constructor setting the name and initialising an empty transform list.

Parameters:

name - the name of this BioAssemblyData object

BioAssemblyData

public BioAssemblyData()

Constructor without setting the name.

Method Detail

getTransformList

public final List<BioAssemblyTransformation> getTransformList()

Gets the list of transforms.

Returns:

the transforms

setTransformList

public final void setTransformList(List<BioAssemblyTransformation> inputTransforms)

Sets the transforms.

Parameters:

inputTransforms - the new transforms

getName

public String getName()

Returns:

the name of the bioassembly - e.g. the assembly_id from mmCIF files.

setName

public void setName(String name)

Parameters:

name - the name to set - e.g. the assembly_id from mmCIF files