Package | Description |
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org.rcsb.mmtf.decoder |
Decoding structure data from a compressed form.
|
org.rcsb.mmtf.encoder |
Encoding structure data to a compressed form.
|
Modifier and Type | Class and Description |
---|---|
class |
GenericDecoder
A genric decoder of MMTF data - that does not hard code the encoding strategy.
|
Modifier and Type | Method and Description |
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static void |
DecoderUtils.addEntityInfo(StructureDataInterface dataApi,
StructureAdapterInterface structInflator)
Add the entity info to the structure.
|
static void |
DecoderUtils.addHeaderInfo(StructureDataInterface dataApi,
StructureAdapterInterface structInflator)
Add ancilliary header information to the structure.
|
static void |
DecoderUtils.addInterGroupBonds(StructureDataInterface dataApi,
StructureAdapterInterface structInflator)
Generate inter group bonds.
|
static void |
DecoderUtils.addXtalographicInfo(StructureDataInterface dataApi,
StructureAdapterInterface structInflator)
Add the crystallographic data to the structure.
|
static void |
DecoderUtils.generateBioAssembly(StructureDataInterface dataApi,
StructureAdapterInterface structInflator)
Parses the bioassembly data and inputs it to the structure inflator
|
Constructor and Description |
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StructureDataToAdapter(StructureDataInterface inputApi,
StructureAdapterInterface inputInflator)
Passes data from the data interface to the inflator interface.
|
Modifier and Type | Class and Description |
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class |
AdapterToStructureData
A class to move data from the
StructureAdapterInterface
to the StructureDataInterface . |
Modifier and Type | Method and Description |
---|---|
static StructureDataInterface |
ReducedEncoder.getReduced(StructureDataInterface structureDataInterface)
Get the reduced form of the input
StructureDataInterface . |
Modifier and Type | Method and Description |
---|---|
static List<BioAssemblyData> |
EncoderUtils.generateBioassemblies(StructureDataInterface structureDataInterface)
Find the bioassembly information as a list from the
StructureDataInterface . |
static Entity[] |
EncoderUtils.generateEntityList(StructureDataInterface structureDataInterface)
Generate the entity level information from the
StructureDataInterface . |
static Group[] |
EncoderUtils.generateGroupList(StructureDataInterface structureDataInterface)
Regenerate a group map from the
StructureDataInterface . |
static StructureDataInterface |
ReducedEncoder.getReduced(StructureDataInterface structureDataInterface)
Get the reduced form of the input
StructureDataInterface . |
static String |
EncoderUtils.getTypeFromChainId(StructureDataInterface structureDataInterface,
int chainInd)
Get the type of a given chain index.
|
static void |
EncoderUtils.transferBioassembly(StructureDataInterface structureDataInterface,
AdapterToStructureData adapterToStructureData)
Transfer bioassembly data from a
StructureDataInterface to an AdapterToStructureData . |
Constructor and Description |
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GenericEncoder(StructureDataInterface structureDataInterface)
The constructor for the encoder.
|
GenericEncoder(StructureDataInterface structureDataInterface,
int precision)
The constructor for the encoder.
|
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